박종화의 연구논문들

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86) PDBWiki: added value through community annotation of the Protein Data Bank
Henning Stehr1,*, Jose M. Duarte1, Michael Lappe1, Jong Bhak2,* and Dan M. Bolser1
1Otto-Warburg-Laboratory, Max Planck Institute for Molecular Genetics, Berlin, Germany and 2Theragen BiO Institute, Suwon, South Korea. se Vol. 2010:baq009; doi:10.1093/database/baq009 
 
85) Mapping Human Genetic Diversity in Asia. The HUGO Pan-Asian SNP Consortium. Science. 2009. Dec. 11th. (As a Korean Principal Investigator).

84) PDbase: a database of Parkinson's Disease-related genes and genetic variation using substantia nigra ESTs
Yang JO, Kim WY, Jeong SY, Oh JH, Jho S, Bhak J*, and Kim NS*, BMC Genomics 2009, 10(Suppl 3):S32 (3 December 2009)
83) MitoInteractome: Mitochondrial protein interactome database, and its application in 'aging network' analysis
Reja R, Venkatakrishnan AJ, Lee J, Kim BC, Ryu JW, Gong S, Bhak J*, and  Park D*, BMC Genomics 2009, 10(Suppl 3):S20 (3 December 2009) 

82) PutidaNET: Interactome database service and network analysis of Pseudomonas putida KT2440
Park SJ, Choi JS, Kim BC, Jho SW, Ryu JW, Park D, Lee KA, Bhak J*, and Kim SI*, BMC Genomics 2009, 10(Suppl 3):S18 (3 December 2009)

81) The Korean Bird Information System (KBIS) through open and public participation Paik IH, Lim J, Chun BS, Jin SD, Yu JP, Lee JW, Bhak J, and Paek WK, BMC Bioinformatics 2009, 10(Suppl 15):S11 (3 December 2009)

80) Gevab: a prototype genome variation analysis browsing server.
Kim WY, Kim SY, Kim TH, Ahn SM, Byun HN, Kim D, Kim DS, Lee YS, Ghang H, Park D, Kim BC, Kim C, Lee S, Kim SJ, and Bhak J* BMC Bioinformatics 2009, 10(Suppl 15):S3 (3 December 2009) 

79) MitoVariome: a variome database of human mitochondrial DNA. Lee YS, Kim WY, Ji M, Kim JH, and Bhak J*
BMC Genomics 2009, 10(Suppl 3):S12 (3 December 2009)

78) COMUS: Clinician-Oriented locus-specific MUtation detection and deposition System
Jho S, Kim BC, Ghang H, Kim JH, Park D, Kim HM, Jung S, Yoo K, Kim HJ, Lee S, and Bhak J*, BMC Genomics 2009, 10(Suppl 3):S35 (3 December 2009) 

77) BioBarcode: a general DNA barcoding database and server platform for Asian biodiversity resources
Lim J, Kim SY, Kim S, Eo HS, Kim CB, Paek WK, Kim W*, and Bhak J*, BMC Genomics 2009, 10(Suppl 3):S8 (3 December 2009

76) ssSNPTarget: Genome-Wide Splice-Site Single Nucleotide Polymorphism Database, Ok Yang J, Kim WY, and Bhak J. Human mutation, 2009 Sep. 16th, PMID: 19760752

75) The first Korean genome sequence and analysis: Full genome sequencing for a socio-ethnic group.
Sung-Min Ahn, Tae-Hyung Kim, Sunghoon Lee, Deokhoon Kim, Ho Ghang, Daesoo Kim, Byoung-Chul Kim, Sang-Yoon Kim, Woo-Yeon Kim, Chulhong Kim, Daeui Park, Yong Seok Lee, Sangsoo Kim begin_of_the_skype_highlighting     end_of_the_skype_highlighting, Rohit Reja, Sungwoong Jho, Chang Geun Kim, Ji-Young Cha, Kyung-Hee Kim, Bonghee Lee, Jong Bhak, and Seong-Jin Kim. Genome Research , May 26, 2009. PMID: 19470904

74) Planning the Human Variome Project: The Spain report. Kaput J, Cotton RG, Hardman L, Watson M, Al Aqeel AI, Al-Aama JY, Al-Mulla F, Alonso S, Aretz S, Auerbach AD, Bapat B, Bernstein IT, Bhak J, Bleoo SL, Blöcker H, Brenner SE, Burn J, Bustamante M, Calzone R, Cambon-Thomsen A, Cargill M, Carrera P, Cavedon L, Cho YS, Chung YJ, Claustres M, Cutting G, Dalgleish R, den Dunnen JT, Díaz C, Dobrowolski S, Dos Santos MR, Ekong R, Flanagan SB, Flicek P, Furukawa Y, Genuardi M, Ghang H, Golubenko MV, Greenblatt MS, Hamosh A, Hancock JM, Hardison R, Harrison TM, Hoffmann R, Horaitis R, Howard HJ, Barash CI, Izagirre N, Jung J, Kojima T, Laradi S, Lee YS, Lee JY, Gil-da-Silva-Lopes VL, Macrae FA, Maglott D, Marafie MJ, Marsh SG, Matsubara Y, Messiaen LM, Möslein G, Netea MG, Norton ML, Oefner PJ, Oetting WS, O'Leary JC, de Ramirez AM, Paalman MH, Parboosingh J, Patrinos GP, Perozzi G, Phillips IR, Povey S, Prasad S, Qi M, Quin DJ, Ramesar RS, Richards CS, Savige J, Scheible DG, Scott RJ, Seminara D, Shephard EA, Sijmons RH, Smith TD, Sobrido MJ, Tanaka T, Tavtigian SV, Taylor GR, Teague J, Töpel T, Ullman-Cullere M, Utsunomiya J, van Kranen HJ, Vihinen M, Webb E, Weber TK, Yeager M, Yeom YI, Yim SH, Yoo HS; on behalf of contributors to the Human Variome Project Planning Meeting. Hum Mutat. 2009 March 20; 30(4):496-510.  PMID: 19306394 [PubMed - indexed for MEDLINE]

73) Kinetics of Zn2+ -induced Brain Type Creatine Kinase Unfolding and Aggregation. Mu H, Lü ZR, Park D, Kim BC, Bhak J, Zou F, Yang JM, Li S, Park YD, Zou HC, Zhou HM. Appl Biochem Biotechnol. 2009 Mar 11.

72) Profiling the dysregulated genes of keratinocytes in atopic dermatitis patients: cDNA microarray and interactomic analyses. Lü ZR, Park D, Lee KA, Ryu JW, Bhak J, Shi L, Lee DY, Park YD, Zou F, Yang JM, J Dermatol Sci. 2009 Jan 19. 

71) The effects of acrylamide on brain creatine kinase: Inhibition kinetics and computational docking simulation. Zhi-Rong Lüa, He-Chang Zou, Seong Jin Park, Daeui Park, Long Shi, Sang Ho Oh, Yong-Doo Park, Jong Bhak and Fei Zou, INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2009, 44(2):128-132.

70) Dysregulated genes of extrinsic type of atopic dermatitis: 34K microarray and interactomic analyses. Zhi-Rong Lü1, a, Tae-Ho Park1, b, Eil-Soo Leec, Kea-Jeung Kimb, Daeui Parkd, Byoung-Chul Kimd, Seong-Woong Chod, Jong Bhak, Yong-Doo Parka, Fei Zoua, and Jun-Mo Yang, Journal of Dermatological Science, 2009, 53(2):146-165.

69) Personal Genomics, Bioinformatics, and Variomics. Jong Bhak, Ho Ghang, Rohit Reja and Sangsoo Kim begin_of_the_skype_highlighting     end_of_the_skype_highlighting, Genomics & Informatics, 2008, 6(4):161-165.

68) An integrated korean biodiversity and genetic information retrieval system. Jeongheui Lim begin_of_the_skype_highlighting     end_of_the_skype_highlighting, Jong Bhak, Hee-Mock Oh, Chang-Bae Kim, Yong-Ha Park and Woon Kee Paek, BMC BIOINFORMATICS, 2008, 9(12):S24.

67) An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases. Jin Ok Yang, Sohyun Hwang, Jeongsu Oh, Jong Bhak and Tae-Kwon Sohn, BMC Bioinformatics, 2008, 9(12):S19.

66) Prediction and evaluation of protein-protein interaction in keratinocyte differentiation. Hyun Kyung Yoon, Kyung-Cheol Sohn, Jung-Suk Lee, Yu Jin Kim, Jong Bhak, Jun-Mo Yang, Kwan-Hee You, Chang-Deok Kim, Jeung-Hoon Lee, BBRC, 2008,377(2):662-667.

65) Transcriptome analysis and identification of regulators for long-term plasticity in Aplysia kurodai. Yong-seok Lee, Sun-Lim Choi, Tae-Hyung Kim, Jin-A Lee, Hyong Kyu Kim, Hyoung Kim, Deok-Jin Jang, Jennifer J. Lee, Sunghoon Lee, Gwang Sik Sin, Chang-Bae Kim, Yutaka Suzuki, Sumio Sugano, Tai Kubo, Leonid L. Moroz, Eric R. Kandel, Jong Bhak and Bong-Kiun Kaang, PNAS, 2008, 105(47):18602-18607.

64) The Effect of Histidine Residue Modification on Tyrosinase Activity and Conformation: Inhibition Kinetics and Computational Prediction. Lin Gou, Zhi-Rong Lu, Daeui Park, Sang Ho Oh, Long Shi, Seong Jin Park, Jong Bhak, Yong-Doo Park, Zhen-Long Ren and Fei Zou, Journal of Biomolecular Structure & Dynamics, 2008, 26(3):395-401.

63) Structural Bioinformatics Analysis of Disease-related Mutations. Seong-Jin Park, Sangho Oh, Daeui Park and Jong Bhak, Genomics & Informatics, 2008(September), 6(3):142-146.

62) Identification of gene-related Korean patents and construction of a database sever for Korean patent sequences. Byungwook Lee, Seon Kyu Kim, Tae Hyung Kim, Sangsoo Kim begin_of_the_skype_highlighting     end_of_the_skype_highlighting, Gee Chan Ryu and Jong Bhak, BIOTECHNOLOGY AND BIOPROCESS ENGINEERING, 2008, 13(2):248-251.

61) MassNet: a functional annotation service for protein mass spectrometry data. Daeui Park, Byoung-chul Kim, Seong-Woong Cho, Seong-Jin Park, Jong-Soon Choi, Seung Il Kim, Jong Bhak and Sunghoon Lee, Nucleic Acids Research, 2008, 1-5.

60) Cyanobacterial hybrid kinase SLL0043 regulates phototaxis by suppressing pilin and twitching motility protein. Bong-Jeong Shin, Jeehyun Oh, Sungsoo Kang, Young-Ho Chung, Young Mok Park, Young Hwan Kim, Seungil Kim, Jong Bhak and Jong-Soon Choi, JOURNAL OF MICROBIOLOGY, 2008, 46(3):300-308.

59) Automatic synthronization and distribution of biological databases and software over low-bandwidth networks among developing countries. Unitsa Sangket, Amornrat Phongdara, Wilaiwan Chotigeat, Darran Nathan begin_of_the_skype_highlighting     end_of_the_skype_highlighting, Woo-Yeon Kim, Jong Bhak, Chumpol Ngamphiw, Sissades Tongsima, Asif M. Khan, Honghuang Lin and Tin Wee Tan, Bioinformatics, 2008, 24(2):299-301.

58) Pocket extraction on proteins via the Voronoi diagram of spheres. Donguk Kim, Cheol-Hyung Cho, Youngsong Cho, Joonghyun Ryu, Jonghwa Bhak and Deok-Soo Kim, Journal of Molecular Graphics & Modelling, 2008, 26(7):1104-1112. (SCI)

57) Predicting the Interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service. Jeong-Gu Kim, Daeui Park, Byoung-Chul Kim, Seong-Woong Cho, Yeong Tae Kim, Young-Jin Park, Hee Jung Cho, Hyunseok Park, Ki-Bong Kim, Kyong-Oh Yoon, Soo-Jun Park, Byoung-Moo Lee and Jong Bhak, BMC Bioinformatics, 2008, 9:41

56) SNP@Promoter: A database of human SNPs (Single Nucleotide Polymorphisms) within putative promoter region. Byoung-Chul Kim, Woo-Yeon Kim, Daeui Park, Won-Hyong Chung, Kwang-sik Shin and Jong Bhak*, BMC Bioinformatics, 13 Feb. 2008, 9:S1-S2.

55) SynechoNET: integrated protein-protein interaction database of a model cyanobacterium /Synechocystis/ sp. PCC 6803. Woo-Yeon Kim*, Sungsoo Kang*, Byoung-Chul Kim, Jeehyun Oh, Seongwoong Cho, Jong Bhak§ , and Jong-Soon Choi§, BMC Bioinformatics, 13 Feb. 2008, 9:S1-S20.

54) Proteomic approaches to the analysis of atopic dermatitis and new insights from interactomics., Yong-Doo Park, Daeui Park, Jong Bhak and Jun-Mo Yang, PROTEOMICS - CLINICAL APPLICATIONS, 2008, 2(3):290-300. the 2008 Annual Reviews issue

53) Multi-resolution protein model. Deok-Soo Kim , Bohyung Lee , Chung-In Won , Donguk Kim, Joonghyun Ryu , Youngsong Cho, Chong-Min Kim, Sung-Hoon Lee and Jonghwa Bhak, LECTURE NOTES IN COMPUTER SCIENCE, 2007, 4706(2):639-652.

52) GS2PATH: A web-based integrated analysis tool for finding functional relationships using gene ontology and biochemical pathway data. Jin Ok Yang, Charny Park, Byungwook Lee, Sangsoo Kim begin_of_the_skype_highlighting     end_of_the_skype_highlighting, Jong Bhak* and Hyun Goo Woo, Bioinformation, Dec. 30, 2007, 2(5):194-196.

51) Biological Object Downloader (BOD) Service for Easy Download and Management of Biological Databases. Daeui Park, Jungwoo Lee, Giseok Yoon, Sungsam Gong begin_of_the_skype_highlighting     end_of_the_skype_highlighting and Jong Bhak, Genomics & Informatics, Dec. 2007, 5(4):196-199.

50) CONSORF: a consensus prediction system for prokaryotic coding sequences. Sungsoo Kang, Sung-Jin Yang, Sangsoo Kim begin_of_the_skype_highlighting     end_of_the_skype_highlighting* , and Jong Bhak*, Bioinformatics, 8 Oct. 2007, 23(22):3088-3090 begin_of_the_skype_highlighting              3088-3090      end_of_the_skype_highlighting.

49) Genomic Distribution of Simple Sequence Repeats in Brassica rapa. Chang Pyo Hong, Zhong Yun Piao, Tae Wook Kang, Jacqueline Batley, Tae-Jin Yang, Yoon-Kang Hur, Jong Bhak, Beom-Seok Park, David Edwards and Yong Pyo Lim. Mol. Cells, 6 March 2007, 23(3):349-356.

48) Impact of Transcriptional Properties on Essentiaity and Evolutionary Rate. Jung Kyoon Choi, Sang Cheol Kim, Jungmin Seo, Sangsoo Kim begin_of_the_skype_highlighting     end_of_the_skype_highlighting and Jong Bhak, Genetics, January 2007, 175:199-206.

47) Sequence-level analysis of the diploidization process in the triplicated FLOWERING LOCUS C region of Brassica rapa. Yang TJ, Kim JS, Kwon SJ, Lim KB, Choi BS, Kim JA, Jin M, Park JY, Lim MH, Kim HI, Lim YP, Kang JJ, Hong JH, Kim CB, Bhak J, Bancroft I, Park BS. Plant Cell, 2006, 18(6):1339-1347.

46) Parameter selection of pocket extraction algorithm using interaction interface. Kim Chong-Min, Won Chung-In, Ryu Joonghyun, Cho Cheol-Hyung, Bhak Jonghwa and Kim Deok-Soo, September 2006, Journal of Zhejiang University - Science A, 7(9):1492-1499.

45) BioCC: An Openfree Hypertext Bio Community Cluster for Biology. Sungsam Gong begin_of_the_skype_highlighting     end_of_the_skype_highlighting, TaeHyung Kim, Jungsu Oh, Jekeun Kwon, SuAn Cho, Dan Bolser and Jong Bhak, Genomics & Informatics, September 2006, 4(3):125-128.

44) Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information. Sunghoon Lee, Byungwook Lee, Insoo Jang, Sangsoo Kim begin_of_the_skype_highlighting     end_of_the_skype_highlighting and Jong Bhak, Nucleic Acids Research, April 19, 2006, 34:W99-W103. (ISSN:0305-1048)

43) Functional Annotation and Analysis of Korean Patented Biological Sequences Using Bioinformatics. Byung Wook Lee, Tae Hyung Kim, Seon Kyu Kim, Sang Soo Kim, Gee Chan Ryu and Jong Bhak, Mol. Cells, March 2006, 21(2):269-275.

42) HExDB: Human EXon DataBase for Alternative Splicing Pattern Analysis and predicted human gene number. Junghwan Park, Minho Lee, Tae Hyung Kim, Jong Bhak, Genomics &Informatics, September 2005, 3(3):112-117.

41) A protein domain interaction interface database: InterPare. Sungsam Gong begin_of_the_skype_highlighting     end_of_the_skype_highlighting, Changbum Park, Hansol Choi, Junsu Ko, Insoo Jang, Jungsul Lee, Dan M. Bolser, Donghoon Oh, Deok-Soo Kim and Jong Bhak, BMC bioinformatics, 2005, 6:207. (ISSN:1471-2105)

40) Euclidean Voronoi diagrams of 3D sphereds and applications to protein structure analysis. Deok-Soo KIM, Youngsong CHO, Donguk KIM, Sangsoo KIM, Jonghwa BHAK and Sung-Hoon LEE, Japan Journal of Industrial and Applied Mathematics, June 2005, 22(2):251-265. (ISSN:0916-7005)

39) BioCovi: A visualization service for comparative genomics analysis, Jungsul Lee, Daeui Park and Jong Bhak, Genomics & Informatics, 2005, 3(2):52-54.

38) Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map), Daeui Park, Semin Lee begin_of_the_skype_highlighting     end_of_the_skype_highlighting, Dan Bolser, Michael Schroeder, Michael Lappe, Donghoon Oh and Jong Bhak, Bioinformatics, May 2005, 21(15):3234-3240 begin_of_the_skype_highlighting              3234-3240      end_of_the_skype_highlighting. (ISSN:1367-4803)

37) PSIbase: a database of protein structural interactome map (PSIMAP), Sungsam Gong begin_of_the_skype_highlighting     end_of_the_skype_highlighting, Giseok Yoon Insoo Jang, Dan Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim begin_of_the_skype_highlighting     end_of_the_skype_highlighting, Donghoon Oh and Jonghwa Bhak, Bioinformatics, 2005, 21(10):2541-2543 begin_of_the_skype_highlighting              2541-2543      end_of_the_skype_highlighting. (ISSN:1367-4803)

36) BioSubroutine: an open web server for bioinformatics algorithms and subroutines. Joowon Lee, Hana Kim, Wonhye Lee, Dongil Chung and Jong Bhak, Genomics & Informatics, March 2005, 3(1):35-38.

35) Architecture of Basic Building Blocks in Protein and Domain Structural Interaction Networks. Hyun S. Moon, Jonghwa Bhak, Kwang H. Lee and Doheon Lee, Bioinformatics, 2005, 21(8):1479-1486. (ISSN:1367-4803)

34) The association of Alu repeats with the generation of potential AU-rich elements (ARE) at 3'untranslated regions. Hyeong Jun An, Doheon Lee, Kwang Hyung Lee and Jonghwa Bhak, BMC Genomics, 21 Dec. 2004, 5:97 p.1-5. (ISSN : 1471-2164)

33) The Atom of Evolution. Jonghwa Bhak, Dan Bolser, Daeui Park, Yoobok Cho, Kiesuk Yoon, Semin Lee begin_of_the_skype_highlighting     end_of_the_skype_highlighting, SungSam Gong, Insoo Jang, Changbum park, Maryana Huston and Hwanho Choi, Genomics & Informatics, December 2004, 2(4):167-173.

32) Using convex hulls to extract interaction interfaces from known structures. Panos Dafas, Dan Bolser, Jacek Gomoluch, Jong Park and Michael Schroeder, Bioinformatics, 2004, 20(10):1486-1490. (ISSN:1367-4803)

31) High correlation between Alu elements and the conversion of 3 UTR of mRNAs processed pseudogenes. Hyeong Jun An, Dokyun Na, Doheon Lee, Kwang Hyung Lee and Jonghwa Bhak, Genomics & Informatics, June 2004 , 2(2):86-91.

30) HPID: The Human Protein Interaction Database. Kyungsook Han, Byungkyu Park, Hyongguen Kim, Jinsun Hong and Jong Park, Bioinformatics, Apr. 29th, 2004, Vol. 20(15):2466-2470 begin_of_the_skype_highlighting              2466-2470      end_of_the_skype_highlighting. (ISSN:1367-4803)

29) Large scale co-evolution analysis of Protein Structural Interlogues using the global Protein Structural Interactome Map(PSIMAP).Wankyu Kim, Dan M. Bolser and Jong Park, Bioinformatics, 2004 Feb. 5th, 20(7):1138-1150. (ISSN : 1367-4803, Impact Factor : 5.742)

28) Biological Network Evolution Hypothesis Applied to Protein Structural Interactome. Dan M. Bolser and Jong Park, Genomics & Informatics, September 2003, Vol. 1(1) 7-19.

27) Challenges and New Approaches in Genomics and Bioinformatics. Jong Park and Kyungsook Han, Genomics & Informatics, September 2003, Vol. 1(1) 1-6.

26) Visualisation and Graph-theoretic Analysis of a Large-scale Protein Structural Interactome. Dan M Bolser, Panos Dafas, Richard Harrington, Jong Park and Michael Schroeder, BMC Bioinformatics, 8 October 2003, 4;45 p.1-22. (ISSN:1471-2105)

25) Visualization and Analysis of Protein Interactions. Byonghyon Ju, Byungkyu Park, Jong Park and Kyungsook Han, Bioinformatics, 2003, 19(2):317-318. (ISSN:1367-4803)

24) Predicting Protein Interactions in Human by Homologous Interactions in Yeast. Hyongguen Kim, Jong Park and Kyungsook Han, Lecture Notes in Computer Science, 2003, Vol.2637, 159-165. (ISSN:0302-9743 begin_of_the_skype_highlighting              0302-9743      end_of_the_skype_highlighting)

23) Large Scale Statistical Prediction of Protein-Protein Interaction by Potentially Interacting Domain (PID) Pair. Wankyu Kim, Jong Park and Jungkeun Suh, Genome Informatics, 2002, 13: 42-50.

22) InterViewer: Dynamic Visualization of Protein-Protein Interactions. Kyungsook Han, Byonghyon Ju and Jong Park, Lecture Notes in Computer Science, 2002, Vol.2528, 364-365. (ISSN:0302-9743 begin_of_the_skype_highlighting              0302-9743      end_of_the_skype_highlighting)

21) Sequence similarity between stereocilin and otoancorin points to a unified mechanism for mechanotransduction in the mammalian inner ear. Luca Jovine, Jong Park and Paul M Wassarman, BMC Cell Biology, 2002, 3:28 (ISSN-NO:1471-2121)

20) Protein Interactions in the Whole Human Genome. Kyungsook Han, Byunggyu Park, Hyongguen Kim, Hongjin Kim and Jong Park, Genome Informatics, 2002, Vol.13, 318-319 (Poster presentation).

19) An Integrated Bioinformatic Search Server: Sequences, Structure, Interaction, and Function of Proteins (SSIF) Server. Jaehyung Lee, Insong Koh, Jong Park, Genome Informatics, 2001, 12: 480-481.

18) Protein Classification Comparison Server. Junhyung Park, Sungryong Ryu, Cheolmin Kim, Insong Koh, Jong Park, Genome Informatics, 2001, 12: 350-351.

17) Conservation of Protein Interaction Network in Evolution. Jong Park and Dan Bolser, Genome Informatics, 2001, 12:135-140.

16) Generating protein interaction maps from incomplete data: application to fold assignment. Lappe M., Jong Park, Niggemann O. and Holm L., Bioinformatics, 2001, Vol.17 Suppl.1, S149-S156. (ISMB 2001 paper printed in Bioinformatics) (ISSN:1367-4803)

15) Mapping protein family interactions: intramolecular and intermolecular protein family interaction repertoires in the PDB and yeast. Jong Park, Lappe M. and Teichmann SA., Journal of Molecular Biology, 2001 Mar, 30;307(3):929-938. (ISSN : 0022-2836, Impact Factor : 5.542)

14) PartsList: a web-based system for dynamically ranking protein folds based on disparate attributes, including whole-genome expression and interaction information. Qian J., Stenger B., Wilson CA., Lin J., Jansen R., Teichmann SA., Jong Park, Krebs WG., Yu H., Alexandrov V., Echols N. and Gerstein M., Nucleic Acids Res., 2001, 29(8):1750-1764. (ISSN:0305-1048)

13) A fully automatic evolutionary classification of protein folds: Dali domain dictionary version 3.Dietmann S., Jong Park, Notredame C., Heger A., Lappe M. and Holm L., Nucleic Acids Res., 2001 Jan, 29(1):55-57. (ISSN:0305-1048)

12) Estimating the significance of sequence order in protein secondary structure prediction. Jong Park, Sabine Dietmann, Andreas Heger and Liisa Holm, Bioinformatics, 2000, 16(11):978-987. (for Issue 9) (ISSN:1307-4803)

11) Fast assignment of protein structures to sequences using the intermediate sequence library PDB-ISL. Sarah A. Teichmann, Cyrus Chothia, George M. Church and Jong Park, Bioinformatics, 2000, 16(2), 117-124. (ISSN:1367-4803)

10) DaliLite workbench for protein structure comparison. Liisa Holm and Jong Park, Bioinformatics, 2000, Vol 16. Issue 6, p566-567. (ISSN:1367-4803)

9) RSDB: representative sequence databases with high information content. Jong Park, Liisa Holm, Andreas Heger and Cyrus Chothia, Bioinformatics, 2000 May, Vol 16. Issue No. 5. 458-464. (ISSN:1367-4803)

8) Sequence Search Algorithm Assessment and Testing Toolkit (SAT). Jong Park, Liisa Holm and Cyrus Chothia, Bioinformatics, 2000, Vol 16. No.2, 104-110. (ISSN:1367-4803)

7) Sequence Comparisons Using Multiple Sequences Detect Three Times as Many Remote Homologues as Pairwise Methods. Jong Park, Karplus K., Barrett C., Hughey R., Haussler D., Hubbard T. and Chothia C., Journal of Molecular Biology, 11, Dec, 1998, 284(4):1201-1210. (ISSN:0022-2836)

6) Structural assignments to the proteins of Mycoplasma genitalium show that they have been formed by extensive gene duplications and domain rearrangements. Sarah Teichmann, Jong Park and Cyrus Chothia, PNAS, 8, Dec, 1998, 95(25):14658-14663.

5) DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins. Jong Park and Sarah Teichmann, Bioinformatics, 1998, 14(2):144-50. (ISSN:1367-4803)

4) Intermediate sequences find distant sequence homologues. Jong Park, Sarah A. Teichmann, Tim Hubbard and Cyrus Chothia, Journal of Molecular Biology,. 17, Oct, 1997, 273(1):349-354. (ISSN:0022-2836)

3) Protein structure prediction: Playing the fold. Hubbard T, Jong Park, Lahm A., Leplae R. and Tramontano A., TRENDS IN BIOCHEMICAL SCIENCES, 1996 Aug, 21(8):279-281. (ISSN:0968-0004)

2) Update on protein structure prediction: results of the IRBM 1995 workshop. Hubbard T., Tramontano A., Barton G., Jones D., Sippl M., Valencia A., Lesk A., Moult J., Rost B., Sander C., Schneider R., Lahm A., Leplae R., Buta C., Eisenstein M., Fjellstr^m O., Floeckner H., Grossman G., Hansen J., Helmer Citterich M., Joergensen F.S., Marchler-Bauer A., Osuna J., Jong Park, Reinhardt A., Ribas de Pouplana L., Rojo-Dominguez A., Saudek V., Sinclair J., Sturrock S., Venclovas C., Vinals C. 1996, Folding and Design, 1(3), 55-63. (ISSN-NO:1359-0278)

1) Fold recognition and ab initio structure predictions using Hidden Markov Models and beta-strand pair potentials. Tim Hubbard and Jong Park, Proteins, 1995 Nov, 23(3):398-402.
PutidaNET: Interactome database service and network analysis of Pseudomonas putida KT2440
Park SJ, Choi JS, Kim BC, Jho SW, Ryu JW, Park D, Lee KA, Bhak J, Kim SI
BMC Genomics 2009, 10(Suppl 3):S18 (3 December 2009)PutidaNET: Interactome database service and network analysis of Pseudomonas putida KT2440
Park SJ, Choi JS, Kim BC, Jho SW, Ryu JW, Park D, Lee KA, Bhak J, Kim SI
BMC Genomics 2009, 10(Suppl 3):S18 (3 December 2009)